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Doan T, Worden L, Hinterwirth A, Arzika AM, Maliki R, Abdou A, Zhong L, Chen C, Cook C, Lebas E, O’Brien KS, Oldenburg CE, Chow ED, Porco TC, Lipsitch M, Keenan JD, Lietman TM. (2020) Macrolide and Nonmacrolide Resistance with Mass Azithromycin Distribution. N Engl J Med. 2020 Nov 12;383(20):1941-1950. doi: 10.1056/NEJMoa2002606.

Lalitha P, Prajna NV, Sikha M, Gunasekaran R, Hinterwirth A, Worden L, Chen C, Zhong L, Liu Z, Lietman TM, Seitzman GD, Doan T. Ophthalmology. (2020) Evaluation of Metagenomic Deep Sequencing as a Diagnostic Test for Infectious Keratitis. Jul 17:S0161-6420(20)30694-1. doi: 10.1016/j.ophtha.2020.07.030. Online ahead of print.

Doan T, Hinterwirth A, Arzika AM, Worden L, Chen C, Zhong L, Oldenburg CE, Keenan JD, Lietman TM; MORDOR Study Group. (2020) Reduction of coronavirus burden with mass azithromycin distribution. Clin Infect Dis. 2020 May 19:ciaa606. https://doi.org/10.1093/cid/ciaa606 Online ahead of print. PMID: 32426812

Ray KJ, Cotter SY, Arzika AM, Kim J, Boubacar N, Zhou Z, Zhong L, Porco TC, Keenan JD, Lietman TM, Doan T. (2019) High-throughput sequencing of pooled samples to determine community-level microbiome diversity. Ann Epidemiol. 2019 Sep 20. PMID: 31635933

Doan T, Hinterwirth A, Worden L, Arzika AM, Maliki R, Abdou A, Kane S, Zhong L, Cummings SL, Sakar S, Chen C, Cook C, Lebas E, Chow ED, Nachamkin I, Porco TC, Keenan JD, Lietman TM. (2019) Gut microbiome alteration in MORDOR I: a community-randomized trial of mass azithromycin distribution. Nat Med. 2019 Sep; 25(9):1370-1376. PMID: 31406349

Seitzman GD, Hinterwirth A, Zhong L, Cummings S, Chen C, Driver TH, Lee MD, Doan T. (2019) Metagenomic Deep Sequencing for the Diagnosis of Corneal and External Disease Infections. Ophthalmology. 2019 Jun 18. PMID: 31421897

Doan T, Arzika AM, Hinterwirth A, Maliki R, Zhong L, Cummings S, Sarkar S, Chen C, Porco TC, Keenan JD, Lietman TM. (2019) Macrolide Resistance in MORDOR I - A Cluster-Randomized Trial in Niger. N Engl J Med. 2019 Jun 6;380(23):2271-2273. doi: 10.1056/NEJMc1901535. PubMed PMID: 31167060.

Keenan JD, Arzika AM, Maliki R, Boubacar N, Elh Adamou S, Moussa Ali M, Cook C, Lebas E, Lin Y, Ray KJ, O'Brien KS, Doan T, Oldenburg CE, Callahan EK, Emerson PM, Porco TC, Lietman TM. (2019) Longer-Term Assessment of Azithromycin for Reducing Childhood Mortality in Africa. N Engl J Med. 2019 Jun 6;380(23):2207-2214. doi: 10.1056/NEJMoa1817213. PubMed PMID: 31167050.

Lalitha P, Seitzman GD, Kotecha R, Hinterwirth A, Chen C, Zhong L, Cummings S, Lebas E, Sahoo MK, Pinsky BA, Lietman TM, Doan T. (2019) Unbiased Pathogen Detection and Host Gene Profiling for Conjunctivitis. Ophthalmology. DOI:10.1016/j.ophtha.2019.03.039

Oldenburg CE, Sié A, Coulibaly B, Ouermi L, Dah C, Tapsoba C, Bärnighausen T, Lebas E, Arzika AM, Cummings S, Zhong L, Lietman TM, Keenan JD, Doan T. (2019) Indirect Effect of Azithromycin Use on the Intestinal Microbiome Diversity of Untreated Children: A Randomized Trial.  Open Forum Infect Dis., 6(3):ofz061. DOI:10.1093/ofid/ofz061

Seitzman GD, Thulasi P, Hinterwirth A, Chen C, Shantha J, Doan T. (2018) Capnocytophaga Keratitis: Clinical Presentation and Use of Metagenomic Deep Sequencing for Diagnosis. Cornea, 38(2):246-248. DOI: 10.1097/ICO.0000000000001790

Gomez CA, Sahoo MK, Kahn GY, Zhong L, Montoya JG, Pinsky BA, Doan T. (2019) Dual-target, real-time PCR for the diagnosis of intraocular Toxoplasma gondii infections. Br J Ophthalmol, 103(4):569-572. DOI: 10.1136/bjophthalmol-2018-313064

Gonzales JA, Hinterwirth A, Shantha J, Wang K, Zhong L, Cummings SL, Qian Y, Wilson MR, and Acharya NR. (2018) Association of Ocular Inflammation and Rubella Virus Persistence. JAMA Ophthalmol, 137(4):435-438. DOI:10.1001/jamaophthalmol.2018.6185

Oldenburg CE, Sié A, Coulibaly B, Ouermi L, Dah C, Tapsoba C, Bärnighausen T, Ray KJ, Zhong L, Cummings S, Lebas E, Lietman TM, Keenan JD, Doan T. (2018) Effect of Commonly Used Pediatric Antibiotics on Gut Microbial Diversity in Preschool Children in Burkina Faso: A Randomized Clinical Trial. Open Forum Infect Dis. 2018 Nov; 5(11):ofy289. PMID: 30515431.

Doan T, Hinterwirth A, Arzika AM, Cotter SY, Ray KJ, O’Brien KS, Chow ED, Zhou Z, Cummings SL, Fry D, Oldenburg C, Worden L, Porco TC, Keenan JD, and Lietman TM. (2018) Mass Azithromycin Distribution and Community Microbiome: A Cluster-Randomized Trial. Open Forum Infect Dis, 5(8):ofy182. DOI:10.1093/ofid/ofy182

Keenan JD, Bailey RL, West SK, Arzika AM, Hart J, Weaver J, Kalua K, Mrango Z, Ray KJ, Cook C, Lebas E, O’Brien KS, Emerson PM, Porco TC, and Lietman TM. (2018) Azithromycin to Reduce Childhood Mortality in Sub-Saharan Africa. N Engl J Med, 378:1583-1592. DOI: 10.1056/NEJMoa1715474

Chin SA, Morberg DP, Alemayehu W, Melese M, Lakew T, Chen MC, Zhou Z, Doan T, Cevallos V, Lietman TM, and Keenan JD. (2018) Diversity of Chlamydia trachomatis in Trachoma-Hyperendemic Communities Treated with Azithromycin. Am J Epidemiol, 187(9):1840-1845. DOI:10.1093/aje/kwy071

Doan T, Acharya NR, Pinsky BA, Sahoo MK, Chow ED, Banaei N, Budvytiene I, Cevallos V, Zhong L, Zhou Z, Lietman TM and DeRisi JL. (2017) Metagenomic DNA Sequencing for the Diagnosis of Intraocular Infections. Ophthalmology, 124(8):1247-1248. DOI:10.1016/j.ophtha.2017.03.045

Doan T, Arzika AM, Ray KJ, Cotter SY, Kim J, Maliki R, Zhong L, Zhou Z, Porco TC, Vanderscelden B, Keenan JD, and Lietman TM. (2017) Gut Microbial Diversity in Antibiotic-Naïve Children After Systemic Antibiotic Exposure: A Randomized Controlled Trial. Clin Infect Dis, 64(9):1147-1153. DOI:10.1093/cid/cix141

Doan T, Wilson MR, Crawford ED, Chow ED, Khan LM, Knopp KA, O’Donovan BD, Xia D, Hacker JK, Stewart JM, Gonzales JA, Acharya NR, and DeRisi JL. (2016) Illuminating uveitis: metagenomic deep sequencing identifies common and rare pathogens. Genome Med, 8:90. DOI:10.1186/s13073-016-0344-6